The warm aroma of freshly baked goodies wafting through the house can shift any dreary day into something magical. That's precisely what you'll experience with these fudgy Chocolate Cherry Thumbprint Cookies. They elegantly marry rich, dark chocolate with a silky cherry ganache filling that will transport you straight to dessert bliss. Whether you're whipping them up for a special occasion like Valentine's Day, or simply rewarding yourself for making it through the week, these cookies are quick to prepare and impressively delicious. Their chewy texture combined with a beautiful burst of chocolate and cherry flavor makes them a must-try for any dessert lover. So, ready to give your taste buds a delightful surprise? Let's dive into the recipe!

Why are Chocolate Cherry Cookies irresistible?
Decadent, Fudgy Delight: Each bite captures a rich chocolate experience thanks to the fudgy texture, bringing a truly indulgent treat.
Gourmet Touch: The luscious cherry ganache filling elevates these cookies, making them a show-stopper for any occasion.
Quick and Easy: Simple steps make these cookies accessible for both novice and seasoned bakers alike so anyone can create a gourmet dessert.
Perfect for Sharing: Whether at a holiday gathering or a cozy evening in, these cookies are sure to impress friends and family, resembling gourmet chocolates in flavor.
Versatile Options: Feel free to experiment with different fruit fillings or chocolate types to match your preferences. For more delicious ideas, why not try these Eggnog Cookies Soft next?
Memorable Experience: The delightful combination of flavors and textures makes these cookies an unforgettable treat, perfect for sweet celebrations or a cozy night in.
Chocolate Cherry Cookies Ingredients
For the Cookie Dough
- All-Purpose Flour – Provides structure to the cookies; remember to spoon and level for accuracy.
- Dutch-Process Cocoa Powder – Adds a deep, rich flavor; regular cocoa works if you don’t have it available.
- Baking Powder – Ensures slight rise; avoid substituting with baking soda to maintain texture.
- Sea Salt – Enhances the flavors; kosher salt is a great alternative if needed.
- Unsalted Butter – Adds richness; use vegan butter alternative for a dairy-free version.
- Light Brown Sugar – Contributes moisture and a touch of caramel flavor; dark brown sugar can be even richer.
- Granulated White Sugar – Sweetens the cookies; you can reduce the amount for a less sweet bite.
- Egg Yolks – Provide richness and binding; whole eggs can be used in a pinch, but may affect texture.
- Vanilla Extract – Adds aromatic depth; opt for pure vanilla for best results.
For the Ganache
- Chopped Chocolate – This is the star of the ganache; using high-quality dark chocolate like Endangered Species Chocolate is ideal.
- Heavy Cream – Creates a creamy texture in the ganache; half-and-half can be a thinner substitute.
- Cherry Preserves – Adds fruity sweetness; feel free to use fresh or frozen cherries cooked down as an alternative.
These chocolate cherry cookies are sure to impress anyone who has a sweet tooth!
Step‑by‑Step Instructions for Fudgy Chocolate Cherry Cookies
Step 1: Combine Dry Ingredients
In a medium bowl, whisk together 1 cup of all-purpose flour, ¼ cup of Dutch-process cocoa powder, ½ teaspoon of baking powder, and a pinch of sea salt. This mixture will provide essential structure and a deep chocolate flavor to your fudgy Chocolate Cherry Cookies. Set the dry ingredients aside while you prepare the wet mixture.
Step 2: Cream Butter and Sugars
In a large mixing bowl, beat together ½ cup of unsalted butter, ½ cup of light brown sugar, and ¼ cup of granulated white sugar using an electric mixer. Mix on medium speed until the mixture is light and fluffy, about 2-3 minutes. The creamy butter-sugar blend enhances the overall richness of the cookies, laying the groundwork for a delightful treat.
Step 3: Add Egg Yolks and Vanilla
Add 2 large egg yolks and 1 teaspoon of pure vanilla extract to the creamed mixture. Beat well on medium speed until everything is completely combined, about 1 minute. This addition not only enriches the cookie dough but also brings a wonderful aromatic depth that elevates the flavor profile of your Chocolate Cherry Cookies.
Step 4: Mix in Dry Ingredients
Gradually add the reserved dry ingredient mixture to the wet batter, mixing on low speed just until combined; about 30 seconds should suffice. Be careful not to overmix, as you want to maintain the fudgy texture of these cookies. The dough will be thick and luxurious, promising a delightful bake ahead.
Step 5: Shape the Dough
Using a tablespoon, scoop the dough and roll it into balls about 1 inch in diameter. Place each ball on a parchment-lined baking sheet, then make a small indent in the center of each using a ¼ teaspoon measuring spoon. Chill the shaped dough in the refrigerator for about 1 hour to ensure the cookies hold their shape during baking.
Step 6: Preheat Oven and Prepare for Baking
Preheat your oven to 350°F (175°C). While the oven heats, line your baking sheets with parchment paper, ensuring a non-stick surface for the fudgy Chocolate Cherry Cookies. Keeping an eye on the time, this will prepare you for a precise baking session that yields perfectly baked treats.
Step 7: Bake the Cookies
Bake the cookies in the preheated oven for 9-11 minutes or until they appear set on the edges and slightly soft in the center. If the indents have flattened during baking, gently reshape them with a spoon. This step ensures that the cookies are both visually appealing and perfectly designed to hold the upcoming ganache filling.
Step 8: Cool the Cookies
After baking, allow the cookies to cool on the sheet for 5 minutes. This resting time will help them firm up slightly before you transfer them to a wire rack. Once on the rack, let them cool completely. This cooling will create the ideal canvas for the rich chocolate cherry ganache.
Step 9: Prepare the Ganache
While the cookies cool, prepare the ganache by heating ½ cup of heavy cream in a saucepan over medium heat until it just starts to boil. Pour the hot cream over 8 ounces of chopped chocolate in a bowl, letting it sit for a minute before stirring until smooth. Finally, mix in 2 tablespoons of cherry preserves for that fruity burst in your ganache.
Step 10: Fill the Cookies
Once the cookies are completely cooled, fill each indent with the luscious chocolate cherry ganache. Use a small spoon or piping bag for a neat application. To set the ganache and allow the flavors to meld, place the filled cookies in the refrigerator for 10-15 minutes before serving. Your fudgy Chocolate Cherry Cookies are now ready to impress!

What to Serve with Fudgy Chocolate Cherry Thumbprint Cookies
Elevate your dessert experience with the perfect companions for these rich, fudgy delights that will tantalize your taste buds.
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Coffee or Espresso: The robust flavor of coffee perfectly balances the sweetness of the cookies, enhancing their chocolate richness. Pairing a steaming cup of espresso elevates the experience and makes for an elegant dessert interplay.
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Vanilla Ice Cream: A scoop of creamy vanilla ice cream brings a cool contrast to the warm fudgy cookies, creating a delightful mouthfeel that is both comforting and indulgent.
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Fresh Berries: Raspberries or strawberries add a refreshing tartness that beautifully complements the rich chocolate cherry cookies, offering a lovely burst of fruitiness with every bite.
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Milk: A classic pairing, a glass of cold milk softens the richness of the cookies and enhances their fudgy texture. Consider chocolate milk for an extra-chocolaty experience!
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Whipped Cream: Light and airy, whipped cream adds a fluffy texture, making each bite feel indulgent while balancing the deep flavors of the cookies.
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Chocolate Ganache Drizzle: For true chocolate lovers, a drizzle of extra ganache over each cookie amplifies their richness, making each bite truly decadent.
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Red Wine: A fruity red wine, like Merlot, can enhance the cherry flavor within the cookies, creating a unique dessert experience that pairs beautifully with gourmet treats.
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Cheese Platter: For a savory touch, a small cheese platter with soft cheeses like brie or camembert complements the sweet and tart flavors perfectly, offering a luxurious contrast.
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Chocolate Dipped Fruits: Strawberries or cherries dipped in chocolate echo the flavors in your cookies, providing a delightful and visually stunning dessert spread.
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Caramel Sauce: A drizzle of caramel sauce adds a sweet and buttery flavor that pairs exquisitely, enhancing the already sumptuous fudge and cherry mix.
How to Store and Freeze Chocolate Cherry Cookies
Room Temperature: Keep baked cookies in an airtight container at room temperature for up to 3 days. This maintains their fudgy texture and flavor.
Fridge: If you prefer, store cookies in the fridge for up to a week. Just be aware that chilling can slightly alter their texture to be firmer.
Freezer: Freeze cookie dough for up to 2 weeks before baking. Roll into balls, place on a baking sheet until frozen, then transfer to a freezer bag.
Reheating: To enjoy leftover cookies, simply warm in the microwave for about 10-15 seconds. This will revive their gooey, fudgy goodness!
Chocolate Cherry Cookies Variations
Feel free to explore these fun twists and substitutions to make your Chocolate Cherry Cookies even more delightful!
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Dairy-Free: Substitute unsalted butter with coconut oil or a vegan butter alternative for a dairy-free treat that still tastes incredible. Your chocolate cherry cookies will maintain their rich flavor while catering to dietary preferences.
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Flavor Explosion: Add a touch of almond extract along with the vanilla to bring a lovely, nutty undertone to your cookies. This will create a more complex flavor profile that complements chocolate beautifully.
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Nutty Crunch: Fold in ½ cup of chopped walnuts or pecans into the cookie dough for added texture and a delightful crunch with each bite. These nuts provide a lovely contrast to the fudgy centers and enhance the overall experience.
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Spicy Kick: Incorporate a pinch of cayenne pepper or cinnamon into the dry ingredients for a surprising warmth in your cookies. This twist adds an exciting layer of flavor that pairs wonderfully with the sweetness of the cherry.
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Berry Swaps: If you want to shake things up fruit-wise, swap the cherry preserves for raspberry or strawberry preserves for a different fruity flair. Each variation creates a delightful new experience while keeping that luscious ganache center.
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Fruity Fillings: Try swapping in homemade fruit curd, like lemon or passionfruit, for an exciting tart contrast against the chocolate. The bright flavors will bring a refreshing lift that delights the palate.
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Seasonal Flavors: Use pumpkin spice in the dough for a seasonal twist and pair the cherry ganache with a dollop of creamy mascarpone. This transformation makes your cookies perfect for fall celebrations or autumn gatherings.
Pair these variations with other delectable treats, like German Chocolate Poke for a special dessert spread, or enjoy a cup of coffee with your cookies inspired by Chocolate Cherry Smoothie. Happy baking!
Expert Tips for Chocolate Cherry Cookies
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Chill the Dough: Ensure you chill the shaped cookie dough for at least 1 hour. This step is crucial in maintaining the shape during baking and achieving that perfect fudgy texture.
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Accurate Measurement: Spoon and level your flour rather than scooping directly from the bag. This avoids adding too much flour and resulting in dry cookies.
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Custom Ganache: If your ganache seems thick or won't melt fully, consider using a double boiler or gently reheating. The addition of cherry preserves will provide that delightful burst of flavor in your chocolate cherry cookies.
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Don't Overmix: When combining the wet and dry ingredients, mix on low speed just until incorporated. Overmixing can lead to tougher cookies—keep them fudgy!
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Store Properly: Once baked, store your cookies in an airtight container at room temperature for up to three days. This helps maintain their wonderful texture while preserving that indulgent flavor.
Make Ahead Options
These fudgy Chocolate Cherry Cookies are perfect for busy home cooks looking to save time during meal prep! You can prepare the cookie dough up to 24 hours in advance; simply shape the cookies into balls and keep them in an airtight container in the refrigerator. For the ganache, you can also make it up to 3 days ahead and store it in the fridge—just reheat gently before filling the cookies. When you're ready to bake, pop the chilled cookie dough directly into the oven, adding a few extra minutes if they are still cold. This allows you to enjoy homemade cookies with minimal effort, perfect for any sweet occasion!

Chocolate Cherry Cookies Recipe FAQs
What type of flour should I use for Chocolate Cherry Cookies?
I recommend using all-purpose flour for the best structure! Make sure you spoon and level it to avoid excess flour, which can lead to dry cookies.
How long can I store Chocolate Cherry Cookies, and how should I do it?
Store your baked cookies in an airtight container at room temperature for up to 3 days. For longer shelf life, you can keep them in the fridge for up to a week, but their texture may firm up a bit.
Can I freeze the cookie dough before baking?
Absolutely! You can freeze the cookie dough for up to 2 weeks. To do this, roll the dough into balls, place them on a baking sheet until they freeze, then transfer to a freezer bag. When you're ready to bake, you can bake them straight from the freezer—just add a couple of minutes to the baking time!
What should I do if my ganache doesn’t melt properly?
If your ganache isn’t melting smoothly, try using a double boiler for gentle heating. Simply fill a pot with a bit of water, place a heat-safe bowl with your ganache over it, and heat slowly while stirring until melted and combined. This method helps achieve that glorious silky texture.
Are there any dietary considerations for Chocolate Cherry Cookies?
If you're making these cookies for someone with allergies or dietary restrictions, you can use vegan butter in place of unsalted butter and substitute the egg yolks with flax eggs (1 tablespoon of flaxseed meal mixed with 2.5 tablespoons of water per yolk, let sit until thickened). Always check your chocolate and preserves to ensure they’re free from allergens if needed!
Can I use different fruit fillings for the ganache?
Very! While cherry preserves add a delicious twist, you can experiment with raspberry or strawberry preserves for a new flavor profile. Just keep in mind that this will change the overall taste of your Chocolate Cherry Cookies!

Fudgy Chocolate Cherry Cookies to Wow Your Sweet Tooth
Ingredients
Equipment
Method
- In a medium bowl, whisk together flour, cocoa powder, baking powder, and sea salt. Set aside.
- In a large mixing bowl, beat butter, brown sugar, and white sugar until fluffy, about 2-3 minutes.
- Add egg yolks and vanilla to the mixture, beating until fully combined, around 1 minute.
- Gradually mix in the dry ingredients until just combined, being careful not to overmix.
- Scoop dough into 1-inch balls, placing them on a lined baking sheet and making an indent in each.
- Chill the shaped dough in the refrigerator for about 1 hour.
- Preheat your oven to 350°F (175°C) and prepare baking sheets with parchment paper.
- Bake cookies for 9-11 minutes until set on the edges and soft in the center.
- Cool cookies on the sheet for 5 minutes before transferring to a wire rack.
- Prepare the ganache by heating heavy cream until boiling, then pour it over the chopped chocolate.
- Stir until smooth, then mix in cherry preserves.
- Fill each cooled cookie indent with the ganache and refrigerate for 10-15 minutes to set.





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